Writing Samples

PhD Thesis

• "Simulation of a Whole-Cell With the Minimum Number of Genes Necessary for Sustained replication", PhD Thesis, 2010

Technical Research Papers

• Shuler, M.L., Foley, P.L., Atlas, J.C. "Modeling a Minimal Cell", 2012 - Pubmed
• Atlas, J.C., Nikolaev, E., and Shuler, M.L., "Incorporating genome-wide DNA sequence information into a dynamic whole-cell model of Escherichia coli: application to DNA replication", 2008 - Pubmed
• Nikolaev, E., Atlas, J.C., and Shuler, M.L., "Sensitivity and control analysis of periodically forced reaction networks using the Green's function method", 2007 - Pubmed
• Nikolaev, E., Atlas, J.C., and Shuler, M.L., "Computer models of bacterial cells: from generalized coarse-grained to genome-specific modular modules", 2006 - Institute of Physics

General Audience

• "The Genetic Carry-On Limit", Honorable Mention in DOE CSGF Essay Writing Contest, 2007 - PDF
• Cornell Chronicle, Science Writer Intern (e.g., Mouse stem cells, Cornell teaching forum, Fruit Fly Population Genetics)

About Jordan

• Practicum Experience - Cells and Uncertainy